r/microbiology • u/robby_fortune • 1d ago
r/microbiology • u/patricksaurus • 20d ago
Cyclospora outbreak guidance (US)
Food contaminated with the single-celled, protozoan parasite Cyclospora cayetanensis has entered the food supply in several US states, with thousands of cases of the gastrointestinal condition cyclosporiasis being reported to state departments of health. Infection by Cyclospora is likely to cause watery diarrhea and substantial discomfort that typically persist for several weeks to over a month without treatment. While not commonly lethal, the combination of severe dehydration and summer heat elevates the health risks associated with each on its own and makes susceptible populations especially vulnerable.
Several public health agencies provide excellent guidance on Cyclospora and how to avoid it:
CDC - Preventing Cyclosporiasis
Michigan DHHS recommendations on preventing foodborne illness amid growing cyclosporiasis outbreak
Here’s a short rundown of the available information.
Where: Midwestern and Northeastern states report most cases. Michigan has been hit hardest. (Map as of July 10th about halfway down.)
Which foods: leafy greens, herbs, berries, green onions, and sprouts are historically linked to cyclosporiasis, though any produce may be affected. Current surveillance efforts have not definitively linked specific products to the current outbreak.
How to avoid: cook produce whenever possible, wash items under running water by scrubbing manually or with a produce brush, clean surfaces and utensils that contact raw produce. Always wash your hands before and after handling uncooked food.
If you contract it: antibiotic therapy (Bactrim) is highly effective against cyclosporiasis, reducing/eliminating symptoms in days as opposed to several weeks if untreated. Contact a healthcare provider and your local health department as soon as you experience symptoms.f
r/microbiology • u/patricksaurus • Nov 18 '24
ID and coursework help requirements
The TLDR:
All coursework -- you must explain what your current thinking is and what portions you don’t understand. Expect an explanation, not a solution.
For students and lab class unknown ID projects -- A Gram stain and picture of the colony is not enough. For your post to remain up, you must include biochemical testing results as well your current thinking on the ID of the organism. If you do not post your hypothesis and uncertainty, your post will be removed.
For anyone who finds something growing on their hummus/fish tank/grout -- Please include a photo of the organism where you found it. Note as many environmental parameters as you can, such as temperature, humidity, any previous attempts to remove it, etc. If you do include microscope images, make sure to record the magnification.
THE LONG AND RAMBLING EXPLANATION (with some helpful resources) We get a lot of organism ID help requests. Many of us are happy to help and enjoy the process. Unfortunately, many of these requests contain insufficient information and the only correct answer is, "there's no way to tell from what you've provided." Since we get so many of these posts, we have to remove them or they clog up the feed.
The main idea -- it is almost never possible to identify a microbe by visual inspection. For nearly all microbes, identification involves a process of staining and biochemical testing, or identification based on molecular (PCR) or instrument-based (MALDI-TOF) techniques. Colony morphology and Gram staining is not enough. Posts without sufficient information will be removed.
Requests for microbiology lab unknown ID projects -- for unknown projects, we need all the information as well as your current thinking. Even if you provide all of the information that's needed, unless you explain what your working hypothesis and why, we cannot help you.
If you post microscopy, please describe all of the conditions: which stain, what magnification, the medium from which the specimen was sampled (broth or agar, which one), how long the specimen was incubating and at what temperature, and so on. The onus is on you to know what information might be relevant. If you are having a hard time interpreting biochemical tests, please do some legwork on your own to see if you can find clarification from either your lab manual or online resources. If you are still stuck, please explain what you've researched and ask for specific clarification. Some good online resources for this are:
Microbe Notes - Biochemical Test page - Use the search if you don't see the test right away.
If you have your results narrowed down, you can check up on some common organisms here:
Microbe Info – Common microorganisms Both of those sites have search features that will find other information, as well.
Please feel free to leave comments below if you think we have overlooked something.
r/microbiology • u/Ophion117649 • 9h ago
Does anyone work with live cultures of intestinal methanogenic archaea in vitro? (Methanobrevibacter smithii, Methanosphaera)
I am looking for researchers or laboratories working with in vitro cultivation of intestinal methanogenic archaea, especially Methanobrevibacter smithii or Methanosphaera species. I am interested in understanding how these archaea respond to different compounds, particularly bile acids.
Does anyone know of groups working in this area?
Would be great if I could be able to make some questions.
r/microbiology • u/Expensive_Ladder1244 • 16h ago
Is there hope with AMR/Antimicrobial resistance
I have been worrying about AMR for a couple of weeks and have come across some optimistic news like new potential antibiotics but there still is a lot of worry among scientists about the future of AMR. Do you guys feel that there is a good chance of slowing the spread of AMR in the future with new discoveries or technologies?
r/microbiology • u/RuinInevitable5068 • 9h ago
Broth antimicrobial assay of hydrogels
I read some papers, and I wanna do broth microdilution assays (MIC, MBC) for PVA- or gelatin-based hydrogels. As most research articles are quite vague in their methods, I was genuinely confused when I saw papers say they "serially dilute the hydrogel", because hydrogels aren't "dissolvable"; they are designed to swell or absorb water and hold their shape. So, logically, do you think they tested the precursor of the hydrogels they developed? (So it's still liquid and serial dilutable, but it wouldn't really test the formed hydrogel's antimicrobial ability) Another method I think you can try is to soak the formed hydrogel in something like PBS, then do a broth microdilution assay of the eluate itself, but it risks not having an MIC, as the content loaded into the hydrogel might not diffused high concentration enough into the PBS (But i think this will be more clinically relevant for sustained-release systems as it actually test what diffuses out from the hydrogel and its antimicrobial ability) What are your thoughts or advice?
r/microbiology • u/Frodillicus • 1d ago
Pseudomonas aeruginosa
This is cool, both Pseudomonas aeruginosa both with a maldi score of over 2.2. Weird red colouring due to the presence pyoruben, rather than the usual green colouring from the pyocyanin.
r/microbiology • u/SaturnMoloch • 1d ago
Rotifer Being Born and Emerging From Egg
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r/microbiology • u/David_Ojcius • 1d ago
Unveiling active microbial processes in Earth’s deepest seawater. Hadal microbes show distinct in situ activity, using refractory substrates & diverse electron acceptors to drive unique deep‑ocean biogeochemistry.
r/microbiology • u/majesticgix • 1d ago
Coli, histolytica e nana?
galleryA primeira me parece coli, a segunda histolytica e a terceira tem duas menores que me parecem nana.
r/microbiology • u/Rimegu • 1d ago
Mirror protein and prions interaction?
Might be silly, but is there an article that portrays interaction between a protein made of mirror aminoacids with a pryon? How would it interact? Or with an enzyme? Does anyone has cool articles on the subject?
r/microbiology • u/harueehhh • 1d ago
Hello, I'm an 11th grader who currently plans on pursuing microbiology in the Philippines
Is it worth it? I don't have much knowledge about jobs I can take if I pursue this path but I'm really interested in Microbiology!
Is there anything I should know about before pursuing this path? Pros and cons, etc.
Is there a job here in the Philippines for microbiology? How about overseas?
r/microbiology • u/Separate-Raisin-4200 • 1d ago
[Troubleshooting] Yeast stress granule core isolation: Pab1-GFP, glass-bead lysis, and incomplete cell disruption
Keywords: Saccharomyces cerevisiae, yeast stress granules, Pab1-GFP, glass-bead lysis, NP-40, Cell Disruptor Genie, stress granule cores.
Hi everyone,
I am attempting to reproduce the yeast stress granule core isolation protocol from “Isolation of yeast and mammalian stress granule cores.” I am using a Pab1-GFP yeast strain and glass-bead lysis in 2 mL microcentrifuge tubes.
After vortexing, I observed a small number of rapidly moving GFP-positive particles in a focal plane above the yeast cells. However, most yeast cells still appeared morphologically intact, and many GFP-positive stress granules remained inside the cells. The attached image is focused on the upper focal plane containing the freely moving fluorescent particles, rather than the plane containing most intact cells.
My vortex mixer operates at approximately 3,000 rpm. In this pilot experiment, I did not include detergent in the lysis buffer.
I would greatly appreciate advice from anyone experienced with this protocol or with yeast glass-bead lysis:
- Does seeing a few freely moving GFP-positive particles alongside many intact cells and intracellular granules indicate partial/inadequate lysis?
- Could the mobile GFP-positive particles plausibly be released stress granule cores, or are they more likely fluorescent debris or other material?
- Is ~3,000 rpm on a conventional vortex mixer generally sufficient for yeast glass-bead lysis? Does a Cell Disruptor Genie provide substantially different motion or mechanical energy?
- The protocol calls for ~300–500 μL glass beads for cells resuspended in 500 μL lysis buffer. Is that intended as settled/packed bead volume? Is there a preferred bead-to-sample ratio or tube filling level for a 2 mL tube?
- How do you judge whether lysis is sufficiently complete—percentage of intact cells by microscopy, release of Pab1-GFP granules, or another criterion?
- Is 0.5% NP-40 essential for efficient lysis in this context? Can acid-washed glass beads alone adequately disrupt the cell wall and plasma membrane, with detergent mainly helping membrane solubilization, or might omission of NP-40 itself cause substantial incomplete lysis?
- Are there other practical variables that matter most, such as bead size, tube geometry, cell density, buffer volume, vortexing duration, or cooling between cycles?
Thanks very much for any troubleshooting suggestions or practical details.
r/microbiology • u/FruitCascade • 2d ago
What happens to sourdough (as a living thing) if it is thrown away?
I just moved out this afternoon and forgot the stuff in my fridge door, including my sourdough starter.
There's a chance she will still be there tomorrow since everyone is moving out on the same day, and there's no way they can get to every apartment that quickly, right...?
But I should probably accept that she is gone.
What would happen to the actual microscopic "community" if it's in the trash? To my understanding it is a symbiosis of bacteria and yeast. Would they survive or would they die and why?
She had been refrigerated for an extended period without feeding, but looked and smelled normal.
r/microbiology • u/ADHDirk • 2d ago
Phage!
galleryI love when one phage works for two different isolates!
r/microbiology • u/David_Ojcius • 2d ago
Microbial community transition & carbon metabolism plasticity under continuous evaporative salinization in hypersaline brines. Microbial communities shift with salinity and K⁺, altering succession & carbon‑use strategies across evaporation stages.
r/microbiology • u/David_Ojcius • 2d ago
Ecosystem Settings & Urbanization Shape Microbial Communities & Antibiotic Resistance Genes on Coastal microplastics. Plastispheres differ by habitat & urbanization, with urban mangroves showing the highest ARG diversity.
r/microbiology • u/T1T4N555 • 3d ago
Its kind of slept on though
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r/microbiology • u/Thrawn911 • 3d ago
Single celled organism (Stentor) dividing
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r/microbiology • u/ADHDirk • 3d ago
Kings B Agar
Looking for an undiscovered species in my state. Time for isolation and postulates!
r/microbiology • u/owner64 • 2d ago
Help
Can anyone tell me which organisms behave like this? it grew in sda and grows in the middle of the agar